Resources

A curated set of tools, databases, and references I rely on across the lab, the field, and the analysis pipeline.

Lab & Molecular Biology

NCBI, Sequence databases, BLAST, PubMed.
Ensembl Plants, Genomes and annotation for crop species.
Benchling, Cloud notebook & molecular cloning tools.

Data Analysis & Statistics

R Project, Statistical computing and graphics.
Tidyverse, Opinionated R packages for data science.
gstat, Geostatistical modelling, kriging & variograms.

Geospatial & Field Operations

QGIS, Free, open-source GIS, an ArcGIS alternative.
ArcGIS, Spatial analysis for precision agriculture.

Bioinformatics

Bioconductor, R packages for genomic data analysis.
Galaxy, Web-based platform for reproducible analysis.
igv.js, Embeddable genome browser (planned in tutorials).